FUMA
Use FUMA for post-GWAS functional annotation of genetic variants
Software, Resources & GWAS Sumstats
MAGMA
MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis.
LAVA
LAVA is a tool to conduct genome-wide, local genetic correlation analysis on multiple traits, using GWAS summary statistics as input.
TATES
Use TATES for multivariate GWAS based on P-values from GWAS.
JAG
Use JAG for gene-set analysis in GWAS datasets.
JAMP
Use JAMP for multivariate GWAS analysis, based on raw genotypic data.
Prob2plinkbig
Use Prob2plinkbig to convert large MACH probability files to PLINK dosage files.
Curated geneSets
Expert curated gene-sets that can be used for gene-set analysis.
GWAS Summary Statistics
Download summary statistics from GWAS led by our team here
Multivariate GWAS
Use the provided simulation script to compare the Type I error rate and power between multiple multivariate genome-wide association tests.